run from console:
./jre/bin/java -Xmx512m -jar ij.jar
for getting 512MB (for example). (Source: http://imagejdocu.tudor.lu/doku.php?id=faq:technical:how_do_i_increase_the_memory_in_imagej)
Solution 2:
edit the
/usr/bin/imagej
run script OR find it with
$ whereis imagej
then modify the line
declare -i default_mem=768
with the desired memory in MB. Notice limitations depending on total RAM and 32/64 bit system. (Source: http://ubuntuforums.org/archive/index.php/t-1236001.html)
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